The First Mitochondrial Control Region Dataset: Critically Endangered Freshwater Turtles in Malaysia, Orlitia borneensis and Batagur borneoensis
DOI:
https://doi.org/10.11113/mjfas.v19n4.2963Keywords:
Malaysian Giant Turtle, Painted Terrapin, phylogenetic, genetics, GenBankAbstract
The Malaysian Giant Turtles and Painted Terrapin mitochondrial control region has the first data deposited to the GenBank database. This dataset describes phylogenetic tree relationships between the genera Orlitia and Batagur. Orlitia borneensis and Batagur borneoensis are freshwater turtles listed as critically endangered on the International Union for Conservation of Nature (IUCN) Red List and among 24 species of turtles in Malaysia. Since both species are critically endangered, the data provided here can be used for future conservation genetics studies in order to protect the species from being driven to extinction. A sample of each species was collected aseptically from adult O. borneensis (male) and B. borneoensis (female) in captivity at Bukit Paloh, Kuala Berang, Terengganu. The data for this study can be found in the GenBank database with accession numbers OQ571740 and OQ571740.
References
Avise, J. C. (2004). Molecular markers, natural history and evolution (2nd ed.). Sunderland, Mass: Sinauer Associates.
Moritz, C., Dowling, T. E., & Brown, W. M. (1987). Evolution of animal mitochondrial DNA: Relevance for population biology and systematics. Annual Review of Ecology and Systematics, 18(1), 269-292.
Nachman, M. W. (1998). Mitochondrial DNA and the evolution of vertebrates. Current Opinion in Genetics & Development, 8(6), 668-672.
Cheung, S. M., & Dudgeon, D. (2006). Quantifying the Asian turtle crisis: Market surveys in southern China, 2000–2003. Aquatic Conservation: Marine and Freshwater Ecosystems, 16(7), 751-770.
Palupčíková, K., Somerova, B., Protiva, T., Rehak, I., Velenský, P., Hulva, P., Gunalen, D. & Frynta, D. (2012). Genetic and shell-shape analyses of Orlitia borneensis (Testudines: Geoemydidae) reveal limited divergence among founders of the European zoo population. Zootaxa, 3280(1), 56-66.
Mohd Salleh, M. H., Esa, Y., Salleh, S. M., & Mohd Sah, S. A. (2022). Turtles in Malaysia: A review of conservation status and a call for research. Animals, 12(17), 2184.
Gray, J. E. (1873). On a new freshwater tortoise from Borneo (Orlitia borneensis). Journal of Natural History, 11(62), 156-157.
Schlegel, H. & S. Müller. (1845). Over de schildpadden van den Indische Archipel, en beschrijving eener nieuwe soort van Sumatra. In: Temminck, C.J. (ed.), Verhandelingen over de Natuurlijke Geschiedenis der Nederlandsche Overzeesche bezittingen. 1839-1844. Zoologie. 2, 29-36. Leiden
Duli, N. B. (2009). Morphometric and genetic variability of river terrapin (Batagur baska) and painted Terrapin (Batagur borneoensis). Unpublished M. Sc. Thesis. University of Science Malaysia, George Town, Malaysia, 45.
Salleh, M. H. M., & Esa, Y. (2022). Minimally invasive blood collection techniques as a source of gDNA for genetic studies on turtles and tortoises. International Journal of Aquatic Biology, 10(2), 145-150.
Çilingir, F. G., Seah, A., Horne, B. D., Som, S., Bickford, D. P., & Rheindt, F. E. (2019). Last exit before the brink: Conservation genomics of the Cambodian population of the critically endangered southern river terrapin. Ecology and Evolution, 9(17), 9500-9510.
Tamura K., Stecher G., & Kumar S. (2021). MEGA 11: Molecular evolutionary genetics analysis version 11. Molecular Biology and Evolution. https://doi.org/10.1093/molbev/msab120.
Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4, 406-425.
Salleh, M. H. M., Esa, Y. & Pau, N. S-S. (2023). Conservation genetics of the critically endangered Southern River Terrapin (Batagur affinis) in Malaysia: Genetic diversity and novel subspecies distribution Ranges. Biology, 12.
Krishnan, R., Sunil, M., Majhi, A., Tejwan, Y., Srivastava, A. & Das, S. P. (2021). GenBank: MZ156025, Batagur kachuga isolate BK1 D-loop, complete sequence; mitochondrial. National Center for Biotechnology Information (NCBI). https://www.ncbi.nlm.nih.gov/nuccore/MZ156025.
Murray, R. A. (2004). Endohelminths from six rare species of turtles (Bataguridae) from Southeast Asia confiscated by international authorities in Hong Kong, China (Doctoral dissertation, Texas A&M University).
Spinks, P. Q., Thomson, R. C., McCartney-Melstad, E., & Shaffer, H. B. (2016). Phylogeny and temporal diversification of the New World pond turtles (Emydidae). Molecular Phylogenetics and Evolution, 103, 85-97.
Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783-791.
Kimura, M. (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111-120.
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Copyright (c) 2023 Mohd Hairul Mohd Salleh, Yuzine Esa, Amir Asyraf Zainudina Zainudin, Khairul Azhar Romli, Wan Nur Fatin Syafiqah Wan Nawang, Athirah Mohd Bakri, Nor Jasmin Hussin, Siti Amalia Aisyah Abdul Halim
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